rs51078905 SNP Detail

Summary

• ID
  rs51078905
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151855496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACAAAG ATGCAGAATC
  CCCAGCTCTT TAACTCTCAC ACTGTGTATC CCTCCAAGGC CACTTTAACA CTGTAACTTA
  GGAACCTGTG ACTTTTACCA ACTGACATGT GGATCCTGGG TGTCAGCCGC CAAATAAAAA
  CAGTTGGACC TGTCGCTCTA CCAGACTTTA TCTCCAGGGA GATTTTTATA CACACAACAA
  M
  GATGCCTTCT CAGTGCTTGG GTTCTTAACC CACTCAGCCA CTAACAGAGG GCAGATACAT
  TTCTCAACCG TGAACAGCCT GCCGTTAGCA AACTCTGAGG TCCCTTCCTG TTTTCCAGAT
  ATCCAGAAAA CCTGCAGGAC CTCGCTGGTG GCAGCAAAGT CCCAGCTTTG ACTTCCAGCT
  AGACCTGTAA TACCCCAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136101105	ENSMUSSNP1621924	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321028239	CHEV_3_151812823	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51078905					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151855496 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587467	regulatory region 587467			1847 bp distal
Rr587468	regulatory region 587468			within coordinates
Rr587469	regulatory region 587469			1941 bp proximal