rs51069379 SNP Detail

Summary

• ID
  rs51069379
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141974979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT TAGTTTTATG TTTACATTTA
  A
  TAGACAAGCT CTCCTTTTGT ACCTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147752303	ENSMUSSNP2459783	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321394108	CHEV_4_141803583	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51069379					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141974979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr377318	regulatory region 377318			1673 bp upstream
Rr604044	regulatory region 604044			659 bp proximal
Rr604045	regulatory region 604045			1627 bp proximal