rs51062017 SNP Detail

Summary

• ID
  rs51062017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22496922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATAGTC CTGGATCCAT
  TCTTGACTCT TAGCAACTCT GATAGTTTGT TCCTTTCCTA TTGTGATGTT TGGTCAAAGA
  CACACAGTGA TTATCTAAAC TCTTACTTTC TCAACTTTCT CTTTTCATTC TCTGGCCAGA
  AATAACAAGC ATTTTTATGA ACCTTACTCC CTCTCCTTAT CCATTGGCAT CTCCAGGTAA
  Y
  CATCTTCTTC AATCTTATTC ACATCTAAGG TATATGAAGG GTTAAAGTTA TAAAAATAAC
  ACACACACAC ACATATATAT ATAAATACGC ATATATCTAC ATATCCACAC ATATTCATAC
  ACATATACAA ACATACACAT GTTCACACAC ACACACACAC ACACACACAC ACACACACGT
  GCGTGCACAC ACTATACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60871004	NES15983143	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs51062017					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871004	NES15983143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22496922 () rs orientation: forward

Symbol	Name	Function Class
Rr379050	regulatory region 379050	1964 bp downstream
Rr627115	regulatory region 627115	243 bp distal
Rr627116	regulatory region 627116	375 bp proximal