rs51061362 SNP Detail

Summary

• ID
  rs51061362
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146557699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAGTGT CTACCCCTTC
  AATCTACGTT TTCCAACTTC CGTGTTGAGA TTTTGTTAGC GGGCTCTAAG CTCCTCAGAC
  ATCCTGATGC AAGGGCGCTC ACTTGATCTT ACTTTCAGGT TGACTTTTGA TACTCTATTA
  TTATTATCTA AATATAGCTA AATAGTAATA AAAGACCAGA AGAGCCCTTT TGCGAGATCT
  W
  AGGCACTCCT GTGTGTTAAG CTGACATGTG GACTTGGGAC CTGGTGGTCT GGGTCACAAG
  ATGAAGAAGG AGGTGGCCCA GATAGATGTC AGGCCAGCTC CCCTAGCATC CCCTTAGGAG
  GGGATGGCAC CCTGGAGCTT GCGTTGCTAG GTCCTCTGTT AAAGGCGTTC TGAACGCTCC
  CTGAGCGGGA CCAAGAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61097600	NES16606920	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51061362					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097600	NES16606920	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146557699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	186 bp proximal
Gm65628	predicted gene, 65628	within coordinates
Rr587096	regulatory region 587096	within coordinates
Rr587097	regulatory region 587097	434 bp proximal
Rr587098	regulatory region 587098	712 bp proximal
Tssr32369	transcription start site region 32369	415 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	mRNA-UTR