rs51058553 SNP Detail

Summary

• ID
  rs51058553
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38541156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA ACCCTGCCTC ATGTGTGCTT
  C
  CTTGCCAGAT GACATGGTCT TTACT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320719979	CHEV_3_38385929	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51058553					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38541156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13104	CpG island 13104	1601 bp distal
Gm65619	predicted gene, 65619	1524 bp downstream
Rr397648	regulatory region 397648	1957 bp downstream
Rr575676	regulatory region 575676	1892 bp distal
Rr575677	regulatory region 575677	1172 bp distal
Tssr28929	transcription start site region 28929	1796 bp downstream