rs51051389 SNP Detail

Summary

• ID
  rs51051389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152020945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACATAC ACATGCACCC
  ACATGCACAC GCACGCACAC ACATACATAC ACACGCACCC ACACACACCC ACATACACAT
  GCACCCACAT ACACATGCAC CCACATGCAC ACGCACCCAC ATACACACAT ACAACTTGTA
  CACACATATG TGTGAGTACA AATATTTTTT TAAATACCTA ATGCCTTTAA TCCCAGCCCT
  Y
  GGTAGGCAGA GGCCAGCAGA TCTATGAGTT CAAGGCCAGT TTGGGCTACA GAGTGAGCTC
  TAGAATAGCC AGAGCTACAC AGAAAAACCC TGTCTTGAAC AAACAAACAA AACATTATAA
  CAGCTGGCCA GACACTGTGG CACACACTTG TAATTGAAGC ATTTGGAAGA CTGAGCCAGC
  CTGAGCTAAA GAAAGTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136102251	ENSMUSSNP331257	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51051389					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152020945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			40 bp distal
Rr587524	regulatory region 587524			285 bp proximal
Rr587525	regulatory region 587525			503 bp proximal
Rr587526	regulatory region 587526			547 bp proximal
Rr587527	regulatory region 587527			966 bp proximal
Rr587528	regulatory region 587528			1258 bp proximal