rs51049456 SNP Detail

Summary

• ID
  rs51049456
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATATTG TATTGGTCTA
  TGGACATGTT TGTGGGGGTT GTCTTAAGTC AGTTAGTCAA CGTGGAAAAA CACAGCCCAC
  TCTGGGTGGC ACCATTCCTT GGAAGGGACC CTAAACTGTA CACGAGTGAA TAAATAGAAC
  AGAACATACA GGTAAGCAAC TGAGCATGCA TGCAATCATC CTCTCTTTGT CCTTGACTGT
  G
  GATGTGATGT GACCAGCTCC CTCAAGCTCC TGCTGCTACT TCCCTGCTAG GATGTATTAT
  AACCTGAAAT GTTGAGCTAA AAGAAGCTTT GTTCTGTAAG TTGCTTTTTG TCAGGATATT
  TTATTACTGA AACAGAAATA AAACCAAAAC ACCATAATGT AACCACATAT TTCCCATCAT
  TGCAAATTAG CTACCTAAAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132961624	ENSMUSSNP4238241	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs51049456					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104490 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	617 bp proximal
Rr626348	regulatory region 626348	438 bp proximal
Rr626349	regulatory region 626349	1316 bp proximal