rs51047099 SNP Detail

Summary

• ID
  rs51047099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151478221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCCTTG TGTTCCAAAT
  GTTACAGTGA GCTTCATCAA GGAACATTTC TGATTCATTA GAATATTCAC ATGATTTCAT
  AGGATATTAT CCTACACTCT AAAGATATTA AAGATTTCAC TAAGATCTGA TAAAGACGTT
  CAACAAATAG AAATGGGGCT TAGTTTGAAG CTCACCAAGC TTCAAAAATA TAACTAGAGA
  Y
  AGACCTACAA GGGGGGGAAA GCTCACTACT ATGAAAACTT TAAAACATTG AGGAAGAAAC
  TGGATGGTCT CAGGTTCAGG GGTGGGGCTT GGGGGAGGGT AGAGTTAATA TTAAGGAAAG
  GACTGTATTA CCAAGAAAGA TCTGGGGCTT GTTGCAGTCT TCATCAAAAT AACAATGGTG
  CTCCTCACAG AACTAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136098056	ENSMUSSNP5647212	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321026851	CHEV_3_151435548	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51047099					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151478221 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1525 bp distal
Rr587416	regulatory region 587416	1198 bp distal
Rr587417	regulatory region 587417	1267 bp distal