rs51040425 SNP Detail

Summary

• ID
  rs51040425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138221884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG GCCCAGGATG TGGGAATTTC
  Y
  TGGAGGGAGC TGGAGGGAGT GAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss147648558	ENSMUSSNP445251	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321374270	CHEV_4_138050488	CHEVERUD	SCREENING_POP	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs51040425					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138221884 () rs orientation: forward

Symbol	Name	Function Class
Gm32549	predicted gene, 32549	1906 bp upstream
Rr602944	regulatory region 602944	531 bp distal
Rr602945	regulatory region 602945	132 bp proximal
Rr602946	regulatory region 602946	1066 bp proximal
Rr602947	regulatory region 602947	1364 bp proximal
Rr602948	regulatory region 602948	1666 bp proximal
Rr602949	regulatory region 602949	1969 bp proximal