rs51038155 SNP Detail

Summary

• ID
  rs51038155
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139340011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATATAACT AGTCTTGTTC CTCCTACTCT AGCCAGAAAG
  CCTCTAAAGT TACTTGGATT TTTAATTTAA ATCCAGTGTT AGCATAGATC CAGTCAGAAG
  S
  ACACCCAGTC TTCCCCGAGT CTCAGTTTGC TGACCTGTGA AATGAAGCTA ACAAACAAGC
  TACCCTCCAG GTTTGAGGCT GGTCTTAGTT GGCTTCAAAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss63333939	NES17505850	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51038155					SNP	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63333939	NES17505850	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139340011 () rs orientation: forward

Symbol	Name	Function Class
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr377285	regulatory region 377285	1447 bp downstream
Rr603258	regulatory region 603258	583 bp distal
Rr603259	regulatory region 603259	797 bp distal
Rr603260	regulatory region 603260	1885 bp proximal