rs51035411 SNP Detail

Summary

• ID
  rs51035411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125507798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTGTGTT CAATTTCTTT TTCTCCTTGG GATATGGGAA
  CAACACTACC ATAAACAAAA CAGCTTATTT TTGCATATGT AAATATGCTT TTTAGTTTGT
  R
  AATCTTTCAA GTGCTGGAAT TTAAATATTG CCTGTTAATT GTTCCACTCT TCTCTGCTGG
  TAGGATTATT TATTTTCAAT TAAAATTTAC ATAGTTTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147484288	ENSMUSSNP172100	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51035411					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125507798 () rs orientation: forward

Symbol	Name	Function Class
D2Mit105	DNA segment, Chr 2, Massachusetts Institute of Technology 105	58 bp distal
Rr397269	regulatory region 397269	1444 bp upstream
Rr564256	regulatory region 564256	83 bp distal
Rr564257	regulatory region 564257	74 bp proximal
Rr564258	regulatory region 564258	1280 bp proximal
Rr564259	regulatory region 564259	1338 bp proximal
Rr564260	regulatory region 564260	1949 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	Intron