rs51027428 SNP Detail

Summary

• ID
  rs51027428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106694316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GCTTCATCTC TCCCCTTATA
  Y
  ATCAGCTCAC CTTAGTTCCA CATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147172714	ENSMUSSNP984507	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321247400	CHEV_4_106509724	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51027428					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106694316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14533	CpG island 14533	824 bp proximal
Cpgi14534	CpG island 14534	1715 bp proximal
Gm57074	predicted gene, 57074	445 bp upstream
Gm69615	predicted gene, 69615	421 bp downstream
Rr376971	regulatory region 376971	1322 bp upstream
Rr596834	regulatory region 596834	12 bp proximal
Rr596835	regulatory region 596835	279 bp proximal
Rr596836	regulatory region 596836	456 bp proximal
Rr596837	regulatory region 596837	1037 bp proximal
Rr596838	regulatory region 596838	1092 bp proximal
Rr596839	regulatory region 596839	1928 bp proximal
Tssr38190	transcription start site region 38190	214 bp downstream