rs51025922 SNP Detail

Summary

• ID
  rs51025922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127645774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCTTCTC CAGATGAAGA
  TGTAGAACTC TCAGCTCCTC CTGCACCATA TCTGCTTGGA TGCTGCCATG CTCCTGTCTT
  GATGATAATG GACTGAATCT CTGAACCTGT AAGCCAGCCC CAATTAAATG TTGTCCTTAT
  AAGAGTTGTC TTGGCCATGG TGTCTGTTTA CAGCAGTAAA ACCCTAACTA AGACAACTAC
  Y
  AATTGAAATC GTTTATACTA CACTTGGTAA AGCTTCACAG TCCTACAGGG ACACAACTGG
  AGGAGAACTT TAGGACCTGT GCCATTAGCC AACAGCCATG CTGGACGCAC TGAGGGGGAA
  CCAATGTCAG AGCCAGAGCT AGATCCACAA GGATCCACAA GGATCCTGAG TCAGAGGAGC
  AGGAGTTCTA ACTGTCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135873101	ENSMUSSNP2874915	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51025922					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127645774 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	1651 bp distal
Rr584882	regulatory region 584882	1686 bp distal
Rr584883	regulatory region 584883	115 bp distal
Rr584884	regulatory region 584884	642 bp proximal
Rr584885	regulatory region 584885	1279 bp proximal
Rr584886	regulatory region 584886	1387 bp proximal