rs51024153 SNP Detail

Summary

• ID
  rs51024153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72357836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA GGCAGTATTC TGAATACATT
  R
  TATGTCACCG AGTTATACCC TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133284308	ENSMUSSNP6513100	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321821593	CHEV_6_72330847	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51024153					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72357836 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632156	regulatory region 632156	1247 bp distal
Rr632157	regulatory region 632157	442 bp distal
Rr632158	regulatory region 632158	within coordinates
Rr632159	regulatory region 632159	265 bp distal
Tssr61448	transcription start site region 61448	370 bp upstream
Tssr61449	transcription start site region 61449	827 bp downstream
Tssr61450	transcription start site region 61450	901 bp downstream
Vamp5	vesicle-associated membrane protein 5	385 bp upstream