rs51024097 SNP Detail

Summary

• ID
  rs51024097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156576204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGTGCAG AACAACACAC TGCAAAGCAT
  CTCTGGAGCC GGAGGCCACC ATGAACATCT GGCGGTTCAG TCGCGGTACA TCCTCGTGCT
  CCATGATGGA CAGGGGAGCT GCAGGGGTTG CCCGGTCTTG CTCGCCTGCG CCCAGAGCAG
  R
  CATGCACCTG CCACAACTTG TGCTAAGCAA AGGCAGCTTC GTGGCGCTGG TTCCCTCTCA
  TCTTGGCTGT TACCATCCAA GAGAGCTATT CTCTGTAGGA TTTCTCTGTG GAAAACTGGC
  CAACCGGAGA AAAAAAGGCC TATTGCTACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145804044	ENSMUSSNP6807469	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320072667	CHEV_1_158678765	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51024097					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156576204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	within coordinates
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	within coordinates
Rr421243	regulatory region 421243	523 bp proximal
Rr421244	regulatory region 421244	1272 bp proximal