rs51019898 SNP Detail

Summary

• ID
  rs51019898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86802716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACATCCT CAGAATTTTT
  ATATTCTACA CGACAGTCAC TGAACACCCT TCATGGGGTC TGTCTTAGTT ACTGTTCTAG
  TGCTGAGAAG ACATCATGAC CAAGGCAACT AATAACAAGC ATTTAACTTG AGGACTCACA
  GCACCAGAGG GTTAGAATCC ACGACCGTCT TGGTGGGGGT CACGGCAGCA GACACAGAGC
  R
  TGGCACTGGA GCAGTAGTTG AGAGCTTAGA TGTTGAGATA ACACGAGGCA GAGAGAGGCC
  TAGCTGGGAA TGTGGGTTTC AGAACCCCAA AGCCCACCCC TAGAACACAC CTCCTCCCAA
  AGCCACACCT CCTACCTTCC CAAATAGTTC CACCAAATGG GGACCAAGTA TTCAAATGTA
  TGAATATATG GGGGTCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135450589	ENSMUSSNP1543763	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51019898					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86802716 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579410	regulatory region 579410			576 bp distal
Rr579411	regulatory region 579411			1755 bp proximal