rs51019260 SNP Detail

Summary

• ID
  rs51019260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143628404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTCATT TACTGTTTCC
  TAAGCATTCA GTGCTGCGAG AAACAATGTA AACTGTGATA TGGGCTCTGC TAATTTGGGA
  AGTAGGAAAA AGCCTGGATG ATGGATCCCA AGTGAGTTCA GACAGCCAGG GGTGGATTTG
  TTCCTGCACA GTAATTAACA TCAGGAGCTG CTGGACTGGG AGGCCATTGG ACACATGTGC
  R
  CTCCATATGC TCAGACGTAC TAAGGCTGCT GCCTCCACGC TGCAGTCTCT CCCCTGGAGC
  AATGGGCAGC AATCCAGCCA CCTGGAGTGG AAACCAGGTC AGAGTTAGGT ACAGACATCA
  GGATCCAGAA TCAACAGGAT GGGTTTATCC TAGGAGACTC TGACAAAATG TCTGAGGGGT
  GAAGCTGGAC TACCCCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60852184	NES15998156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51019260					SNP	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852184	NES15998156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143628404 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624267	regulatory region 624267	within coordinates