rs51006891 SNP Detail

Summary

• ID
  rs51006891
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127967177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAACACCG CTCATGGCAC AACCGTCTTT CCTTGGTAGC
  CCCCCTCCTT TTCCTTGTAG TTATTCTTTT CCAGCTAACT TTCTCATTCC CCTATTTTAT
  M
  TGCTTGTCGT GCCCGCCCAT CGCTCCCTGA AGCTTCCCGC TTCTCTTGTC TCTCAACTGT
  CCTTCTCACC ACCACCTCTG CCTCTTAAGT AACTGGGCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147552348	ENSMUSSNP3827084	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51006891					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127967177 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	781 bp upstream
Gm74510	predicted gene, 74510	960 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr564648	regulatory region 564648	710 bp distal
Rr564650	regulatory region 564650	1954 bp distal
Rr564651	regulatory region 564651	291 bp proximal
Rr564652	regulatory region 564652	896 bp proximal
Rr564653	regulatory region 564653	971 bp proximal
Tssr20042	transcription start site region 20042	773 bp upstream