rs51002915 SNP Detail

Summary

• ID
  rs51002915
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA TCGAATATCA GTGATGAAAA
  K
  AATAATAATA ATAATAATAA CGAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60932507	NES16191118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51002915					SNP	T	T	T	T	T	T	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932507	NES16191118	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1902 bp distal
Rr637289	regulatory region 637289			246 bp distal
Rr637290	regulatory region 637290			498 bp distal
Rr637291	regulatory region 637291			447 bp distal
Rr637292	regulatory region 637292			1773 bp proximal
Tssr58395	transcription start site region 58395			1065 bp downstream
Tssr58396	transcription start site region 58396			1051 bp downstream
Tssr58397	transcription start site region 58397			1016 bp downstream
Tssr58398	transcription start site region 58398			993 bp downstream
Tssr58399	transcription start site region 58399			964 bp downstream
Tssr58400	transcription start site region 58400			931 bp downstream
Tssr58401	transcription start site region 58401			897 bp downstream
Tssr58402	transcription start site region 58402			868 bp downstream
Tssr58403	transcription start site region 58403			850 bp downstream
Tssr58404	transcription start site region 58404			839 bp downstream
Tssr58405	transcription start site region 58405			783 bp downstream
Tssr58406	transcription start site region 58406			754 bp downstream
Tssr58407	transcription start site region 58407			732 bp downstream
Tssr58408	transcription start site region 58408			669 bp downstream
Tssr58409	transcription start site region 58409			641 bp downstream
Tssr58410	transcription start site region 58410			623 bp downstream
Tssr58411	transcription start site region 58411			592 bp downstream
Tssr58412	transcription start site region 58412			580 bp downstream
Tssr58413	transcription start site region 58413			556 bp downstream
Tssr58414	transcription start site region 58414			534 bp downstream
Tssr58415	transcription start site region 58415			516 bp downstream
Tssr58416	transcription start site region 58416			498 bp downstream
Tssr58417	transcription start site region 58417			444 bp downstream
Tssr58418	transcription start site region 58418			418 bp downstream
Tssr58419	transcription start site region 58419			398 bp downstream
Tssr58420	transcription start site region 58420			363 bp downstream
Tssr58421	transcription start site region 58421			339 bp downstream
Tssr58422	transcription start site region 58422			326 bp downstream
Tssr58423	transcription start site region 58423			305 bp downstream
Tssr58424	transcription start site region 58424			246 bp downstream
Tssr58425	transcription start site region 58425			207 bp downstream
Tssr58426	transcription start site region 58426			189 bp downstream
Tssr58427	transcription start site region 58427			155 bp downstream
Tssr58428	transcription start site region 58428			144 bp downstream
Tssr58429	transcription start site region 58429			66 bp downstream
Tssr58430	transcription start site region 58430			35 bp downstream
Tssr58431	transcription start site region 58431			52 bp upstream
Tssr58432	transcription start site region 58432			125 bp upstream
Tssr58433	transcription start site region 58433			161 bp upstream
Tssr58434	transcription start site region 58434			599 bp upstream
Tssr62617	transcription start site region 62617			994 bp upstream
Tssr62618	transcription start site region 62618			971 bp upstream
Tssr62619	transcription start site region 62619			935 bp upstream
Tssr62620	transcription start site region 62620			902 bp upstream
Tssr62621	transcription start site region 62621			818 bp upstream
Tssr62622	transcription start site region 62622			278 bp upstream
Tssr62623	transcription start site region 62623			258 bp upstream
Tssr62624	transcription start site region 62624			112 bp upstream
Tssr62625	transcription start site region 62625			within coordinates
Tssr62626	transcription start site region 62626			85 bp downstream
Tssr62627	transcription start site region 62627			116 bp downstream
Tssr62628	transcription start site region 62628			251 bp downstream
Tssr62629	transcription start site region 62629			431 bp downstream