rs51001055 SNP Detail

Summary

• ID
  rs51001055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151808503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTCCGA TTGCCTTTGC
  CTTGGCTTCA GAGGGCTGCG AGAAGAGAAA GTCAAGATAT TGCATTCACA AAATAAAATC
  CCGTGGTGGT CGGAGCACAC ACAGCAGGAA GTAGCTGGCC CATTAGCTAA GTTTAGTGGA
  CATATCCGGA ATACAGCATG ACCTTATAGC TAAGTGTAAA CCAATACAGT AAATACTTAT
  R
  GTGTCAGCAT TAAATAGTAT GGATTTTTTT TCTTTAAGAA AAAGAAAGAA AAGGACGCCA
  TTCCTAAGCT CCGAACTACC TCGATAGGAC AAAGTTGTAG CATAAGTGAT CAGACAGTCG
  TTTTAAAGGG CGTGACAAGT ACACAAGCTG GAAGCCTTCA GAAGGGCGTG ATTTAAGAAC
  TGCGTTTCCA AAGGTGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136100760	ENSMUSSNP5876817	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321028021	CHEV_3_151765830	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51001055					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151808503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			1195 bp downstream
Rr587450	regulatory region 587450			1928 bp distal
Rr587451	regulatory region 587451			1195 bp distal
Rr587452	regulatory region 587452			1933 bp proximal