rs50998879 SNP Detail

Summary

• ID
  rs50998879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141231649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTTTAC GCTAACTCTC
  CGTCCTGTCC AGGACACGAG AGAAGCCCGC TCGTGCCTAC TTCGGAACAT TCTTTGGAAG
  TCTCCCCGGG CCCAAGAGGT CTGAAAGGCA CTCAGCTACC CAGAGGCAGC TTAGCTTTAC
  AACTTGGGGA CACTGGCTTA TTATTGAAAA ACCTCGGCCT AAAGCTGTTC CCTCTAAATG
  Y
  GGCCATTTCT TTAGAATTTT CACCAAAGAC ACAAAGCCAT AATGCACAAT GGCTGTGGCA
  CTGTGACAGG GCACATTCAA AAGCAGCTGT CCCTGCGAGA ATCAAGAGGA TCCCAGGAGG
  CCTGGGGTTT CATGTAGGAA TGGTCACCTG CAGCAGCCCA GCCCACGACA CTGCAGTCAC
  AGATGCACAG TAGGAACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147739616	ENSMUSSNP3500953	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50998879					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141231649 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			221 bp proximal
Rr603781	regulatory region 603781			1594 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant