rs50998251 SNP Detail

Summary

• ID
  rs50998251
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10345179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGAGCTCT CAATGCTCTC TCAGAGGACC AAGGCTTGGT
  TCCCAGCATC TACAGCATAG CAGGGGCTCA CAACTGCTTG TAATCCCACT TCTCCCTCCA
  K
  GGACTCCTGA AACGCACACG GTTTCATAGC CTCCCAGGCA CATACTTATA CAGATGAAAA
  CACTAAATAA GTAATTCTGT AAAGCAGAAG GGAAGCAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134580765	ENSMUSSNP4752969	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320653238	CHEV_3_10280119	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50998251					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10345179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr573601	regulatory region 573601			1242 bp proximal