rs50997140 SNP Detail

Summary

• ID
  rs50997140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127764798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCCTAT TTTTAAGCAG
  GTTTGCACCT CTGAAAATTT TGGTGCAGAG TTGTTCTTAT GGGGTCTCCA TTACCTACCT
  GGCTGTTTTC TCTTCTCTGG TGTTCGCTGG GCTGTACAAC CATTATCGGC CACTGGGTGG
  CGCTGAAGCG CCAGGCAAAT TATTTGCTGT GGTCAGGCCA TCATTTTGAC TTTTAGCCAA
  Y
  ACTAAATGTT ACAGGGAAAG GTTACTGACT TCTGCAGTCT TTGAGATACA ATATTTTATT
  ATCTGTCCAT TTCCCTTGAG TTTTTACTTG ACAAAGTCTG AAGGCATTTT CTTTTTGGTT
  TTAGATTAGA GATATTAATT TATTTGTACA TTTTTGTGAC AAGTGGAGTG TTGAAAAAAA
  AAAAAAACCA TACTGTTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958803	CHEV_3_127674067	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50997140					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127764798 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	within coordinates
Rr52	regulatory region 52	within coordinates
Rr584913	regulatory region 584913	within coordinates
Rr584914	regulatory region 584914	54 bp distal