rs50994451 SNP Detail

Summary

• ID
  rs50994451
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAC ATCGCTGTGG CTGTCCTGGA
  G
  CTCACTCTGT AGACTAGGCT GGCGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147152863	ENSMUSSNP1731464	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50994451					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	1096 bp distal
Rr562107	regulatory region 562107	970 bp distal
Rr562108	regulatory region 562108	256 bp proximal
Rr562109	regulatory region 562109	768 bp proximal
Tcp11l1	t-complex 11 like 1	Intron