rs50993591 SNP Detail

Summary

• ID
  rs50993591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150587899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCGGGCT CATAGACAAC
  TCTTTTACAT GAATCACAAG TTACAAAATC TCATTTTCCT TCAGTACACT GTACCACAAA
  TACCTTCCTG TTTAAAATCA TCATGTCTTT TGTAGTATAT ACTTTAACTT CCAAACAATT
  ATCTCTCTTT AGCATCCAAA TACCAGGTTA ACTAAAAACG CAGTCTTTGT GGGGTCTTTT
  Y
  CTTTTAAGTA GTATAAAAGC AGTTTTCCAA TTGAATGTAA TAATTTGGAA AAAAAAAAGT
  TTTGAGTTTT AGTGATGATA CAAATTATGC TTAGGGAAAA TAATCAGAAA ACTTTAAAAA
  TCAAATCATT CATCTTTTCT AGTAGTTTCT CTAACTTGAA AAATACACTT TTTAGGCAGG
  GTGGTCTATG ACTGCAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60859605	NES15988849	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50993591					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60859605	NES15988849	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150587899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17110	CpG island 17110	575 bp proximal
Gm71525	predicted gene, 71525	829 bp upstream
N4bp2l2	NEDD4 binding protein 2-like 2	Intron
Rr399543	regulatory region 399543	1210 bp upstream
Rr625784	regulatory region 625784	339 bp proximal
Rr625785	regulatory region 625785	840 bp proximal
Rr625786	regulatory region 625786	1154 bp proximal
Rr625787	regulatory region 625787	1168 bp proximal
Rr625788	regulatory region 625788	1433 bp proximal
Rr625789	regulatory region 625789	1961 bp proximal
Tssr49954	transcription start site region 49954	863 bp upstream
Tssr54667	transcription start site region 54667	778 bp downstream
Tssr54668	transcription start site region 54668	881 bp downstream
Tssr54669	transcription start site region 54669	983 bp downstream
Tssr54670	transcription start site region 54670	1126 bp downstream