rs50992513 SNP Detail

Summary

• ID
  rs50992513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG CCTCAAACTC AAAGACCGAG
  Y
  TAAATCGACT CGGAAGGCAA TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932504	NES16191128	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50992513					SNP	C	C	C	C	C	C	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932504	NES16191128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152942 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637289	regulatory region 637289	1657 bp distal
Rr637290	regulatory region 637290	1909 bp distal
Rr637291	regulatory region 637291	1858 bp distal
Rr637292	regulatory region 637292	362 bp proximal
Tssr58412	transcription start site region 58412	1991 bp downstream
Tssr58413	transcription start site region 58413	1967 bp downstream
Tssr58414	transcription start site region 58414	1945 bp downstream
Tssr58415	transcription start site region 58415	1927 bp downstream
Tssr58416	transcription start site region 58416	1909 bp downstream
Tssr58417	transcription start site region 58417	1855 bp downstream
Tssr58418	transcription start site region 58418	1829 bp downstream
Tssr58419	transcription start site region 58419	1809 bp downstream
Tssr58420	transcription start site region 58420	1774 bp downstream
Tssr58421	transcription start site region 58421	1750 bp downstream
Tssr58422	transcription start site region 58422	1737 bp downstream
Tssr58423	transcription start site region 58423	1716 bp downstream
Tssr58424	transcription start site region 58424	1657 bp downstream
Tssr58425	transcription start site region 58425	1618 bp downstream
Tssr58426	transcription start site region 58426	1600 bp downstream
Tssr58427	transcription start site region 58427	1566 bp downstream
Tssr58428	transcription start site region 58428	1555 bp downstream
Tssr58429	transcription start site region 58429	1477 bp downstream
Tssr58430	transcription start site region 58430	1446 bp downstream
Tssr58431	transcription start site region 58431	1347 bp downstream
Tssr58432	transcription start site region 58432	1266 bp downstream
Tssr58433	transcription start site region 58433	1241 bp downstream
Tssr58434	transcription start site region 58434	794 bp downstream
Tssr62622	transcription start site region 62622	1689 bp upstream
Tssr62623	transcription start site region 62623	1669 bp upstream
Tssr62624	transcription start site region 62624	1523 bp upstream
Tssr62625	transcription start site region 62625	1384 bp upstream
Tssr62626	transcription start site region 62626	1319 bp upstream
Tssr62627	transcription start site region 62627	1274 bp upstream
Tssr62628	transcription start site region 62628	1142 bp upstream
Tssr62629	transcription start site region 62629	962 bp upstream