rs50991177 SNP Detail

Summary

• ID
  rs50991177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147899609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGGAAAC ACTGGAGCTG AAGGTTCAGG ATTTTATAGG
  TCAAAATAAG CAACAGAAAG AGGAGAATGA AGGCTGGAGA CAGGAGCTGG AAAAGATTCT
  R
  GAAAAAAAAG GGGAATCAAC AATTCACAGA TCAGACTGAA CAGCAAACAG ATAGAGATAA
  AATTTGGAAG CAAACTCTAG AGGATAATTT ACTAAAGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147983244	ENSMUSSNP581216	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50991177					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147899609 () rs orientation: forward

Symbol	Name	Function Class
Rr367778	regulatory region 367778	1645 bp downstream
Rr398848	regulatory region 398848	346 bp downstream
Rr604504	regulatory region 604504	124 bp distal
Rr604505	regulatory region 604505	381 bp distal
Tssr44549	transcription start site region 44549	477 bp upstream