rs50990851 SNP Detail

Summary

• ID
  rs50990851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41361727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAT TGGGATTAAC ATCTTACAAT
  Y
  ACGGTGATGG TGAAACACTA AATTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60600945	NES16305532	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C		T	C	C	T		T
ss144675432	ENSMUSSNP6980965	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322633639	CHEV_8_41994044	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50990851					SNP	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600945	NES16305532	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41361727 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77028	transcription start site region 77028	1975 bp downstream
Tssr77029	transcription start site region 77029	1805 bp downstream
Tssr77030	transcription start site region 77030	779 bp downstream
Tssr77031	transcription start site region 77031	525 bp downstream
Tssr77032	transcription start site region 77032	270 bp downstream
Tssr77033	transcription start site region 77033	11 bp downstream
Tssr77034	transcription start site region 77034	41 bp upstream
Tssr77035	transcription start site region 77035	972 bp upstream