rs50990307 SNP Detail

Summary

• ID
  rs50990307
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89044588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATTGCACTTC ACACAATAAT TGTGGGAGAC TTCAACACAC
  CACTTTCATC AATAGACAGA TCGTGGAAAC AGAAACTAAA CAGGGACACA GTGAAACTAA
  S
  AGAAGTTATG AAACGAATGG ACTTAACAGA TATCTACAGA ACATTTTATC CTAAAACAAA
  AGGATATACC TTCTTCTCAG CACCTCACGG GACCTTCTCC A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135696165	ENSMUSSNP2794948	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50990307					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89044588 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	within coordinates
Gm68733	predicted gene, 68733	within coordinates
Rr595153	regulatory region 595153	1610 bp proximal
Rr595154	regulatory region 595154	1841 bp proximal
Rr595155	regulatory region 595155	1890 bp proximal
Tssr42402	transcription start site region 42402	191 bp downstream
Tssr42403	transcription start site region 42403	1866 bp downstream