rs50990114 SNP Detail

Summary

• ID
  rs50990114
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139972061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGT GCCTTTCTAC AACGTCTAGC
  K
  TCTTCTCGGT GGCGCTGGAA CCCGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147694904	ENSMUSSNP102703	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50990114					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139972061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15189	CpG island 15189	1118 bp distal
Cpgi15190	CpG island 15190	within coordinates
Cpgi15191	CpG island 15191	1068 bp proximal
Gm69798	predicted gene, 69798	1654 bp upstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603404	regulatory region 603404	532 bp distal
Rr603405	regulatory region 603405	665 bp proximal