rs50989981 SNP Detail

Summary

• ID
  rs50989981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34584260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATCAA TTGATGTATC
  AGTCAATCAG TCAACCATAG CCCCCTATAT TCTTCAAAGA GGGAACAACC TTGTGAGTGT
  GCCATTTGCC TGATTTAACA ACTTCTGTTA CTTAGAGATT TTCTGCAGTG CTAAAGCAAC
  ATCTCTTATA TCAAGGCACA ATGCCTAAGT GTCCAGCCCA CCGTTTCCTA TCCATCAGAG
  Y
  AAAGAAGCAG AAGGATGCAG GCCCATCCTC CTTGGGCTTG TACATTAGCA TTCCAAGTCC
  CACTAGACCA AAATCAGGCA TTGTGCTCTG AACCACTAAA GAAAATGAGA TCAATGAAAG
  TTGTATCCTT TCTGTGGCTT TGCTACCTGA GGCTTCCAAA GTTTAGGCTT AAGGCAAACA
  CAGTGGGTCT AGCAGGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146341879	ENSMUSSNP7143342	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50989981					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34584260 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1110 bp upstream
Rr405932	regulatory region 405932	652 bp upstream
Rr546756	regulatory region 546756	620 bp proximal
Rr546757	regulatory region 546757	1121 bp proximal
Tssr156136	transcription start site region 156136	663 bp upstream
Tssr156137	transcription start site region 156137	1067 bp upstream