rs50988105 SNP Detail

Summary

• ID
  rs50988105
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59528397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGTAGA CCAAGGCTTG
  GGAAATGTTT CTGTTTATAT GGAACAGGAA GTTGGGAAAA AATACTATGG ACTCTTTTTT
  TTTTTCTTTA ATACTAGGGC CATCTCTCCC TTTTGTGGGA CAGCAACTCA TTATCTCCCT
  TTAATGTCTT GCTATGCACT GTCTCTTTCG ATGTTTATTT CCACTTTTTA TTAATTTTTA
  W
  TTTTTTTTTT CAGACAAGAT CTCATCTTCC TACCCAGGCT GATTTTACCC CGTGCATCTC
  TCCAACATCA GCATCCCGAG TGCTCAGTTA CAGGGATAAG CCACATGCCT GGCTTCTTTC
  AACATGTATT TTAAAATGTA TTTGCTAACA TTAAAATATG AAATCTGGTC GGGTGGTGGT
  GGTGCATGCC TTTAATCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132238293	ENSMUSSNP1707085	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss323698890	CHEV_11_59451073	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50988105					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59528397 () rs orientation: forward

Symbol	Name	Function Class
A630028G03Rik	RIKEN cDNA A630028G03 gene	within coordinates
Gm33998	predicted gene, 33998	within coordinates
Rr448219	regulatory region 448219	1114 bp distal
Rr448220	regulatory region 448220	240 bp distal
Rr448221	regulatory region 448221	906 bp proximal