rs50986864 SNP Detail

Summary

• ID
  rs50986864
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGAAAGA AAGGGCCACA
  CAAGCCCAGG GAACAGAATT CCACGCCACA CAGATCTTCT CTGTGGGTTG GGCTCTGCTC
  CAAGGCCCTT TCAAGGTTTC CTTTATTGGC TGCTCACAAG TCAACCTCTG TGGTTAAATG
  CTACCCTACC CCACACTCGG CAGAGGGAGG CTGCGTGCTA CTCCCCTGAA GTCCCAGGGG
  M
  ATCTCTTGAG AATATTGGCT TGAATATGAG TATTTTGGCG TCCTGGTCTA CTCTACTGGG
  CCATCCATAG CAGGTGGGGG TTTGAAAAGG ACTCCAGAAG ACTAAAGCCT TGGGACTCAC
  CTGGGCAATC TGAAGCCTGT GGGGTTTTGT TTGTTTGTTT GTTGTTTGGT TTTGGTTTTT
  CAAGACAGGG TCTCTCTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553261	ENSMUSSNP871254	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50986864					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623728 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr377252	regulatory region 377252	1891 bp upstream
Rr602183	regulatory region 602183	1013 bp distal
Rr602184	regulatory region 602184	719 bp distal
Rr602185	regulatory region 602185	within coordinates
Rr602186	regulatory region 602186	455 bp proximal
Rr602187	regulatory region 602187	578 bp proximal
Rr602188	regulatory region 602188	606 bp proximal
Rr602189	regulatory region 602189	1852 bp proximal
Tssr39650	transcription start site region 39650	1222 bp downstream
Tssr39651	transcription start site region 39651	1021 bp downstream
Tssr39652	transcription start site region 39652	941 bp downstream