rs50981880 SNP Detail

Summary

• ID
  rs50981880
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149737067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagattcac aactaaattt acggggcaga
  cgagggagta ttggtgcaag tctttaattc cagctcgcag gaggtggggg caggcagaac
  tctccgggtt caaggccagt tccaagccaa ccagagctat gtggtggtcg cattcctttT
  K
  AACTGTGGAG AAGTGATCAG AGCAAAACTA CAGGAGGAGG ACTACTGTGT CTCCCTGGAA
  CTTTAGCCTT AGTGTTGTAA GTGGACACTT ACCAGATTCG CTAATTTAAA AAAAAATGTA
  TCACTGAGTG AAATAATATC CCAGTAAACA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss145700921	ENSMUSSNP5965056	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss320043136	CHEV_1_151708446	CHEVERUD	SCREENING_POP	f	SNP			T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs50981880					SNP	T	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149737067 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1494 bp proximal