rs50979568 SNP Detail

Summary

• ID
  rs50979568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100691956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCACTT TCGAGGGTCT
  TTAGGACTAG AGAAAACCAC CATCTTCAAG CTACTGGTTT CTCATCCTTT CCTGAACAAC
  TAGCTGCAGG CTTGACCATC GCTGAGAAAG TCTCATTTAG CTGCAGCCTT CTCACTGAGA
  GCCGCAGGTG GCTTTAAGAG ACGGGTCTGT GGATATTTCT AGATCTTGAC CAACTTTTTT
  R
  AGACACATTC ACATACCATA CAGTTTGTCC ATCCACACTC AATATTTCAG TGGTTTTTAG
  TGTATGTAAA GACACAGGGA CTAACTAGGA AACACTACAA TTTACCCATC CCCTTCTTCT
  TTACATTCTT CTGTTGTAAC CAACCAGGAA TCTACTCTCT GTCTCCGGAG GTTTCCCTGT
  TCTGAACATT CCCTTTGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147117582	ENSMUSSNP1330158	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321228038	CHEV_4_100507364	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50979568					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100691956 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1030 bp distal