rs50978175 SNP Detail

Summary

• ID
  rs50978175
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41362156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG GGCTGCCCAG CGCCTTGAGA
  T
  TTACGCCTGC TCATCCCTTG TTCAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144675481	ENSMUSSNP3831246	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322633644	CHEV_8_41994473	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50978175					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41362156 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77030	transcription start site region 77030	1208 bp downstream
Tssr77031	transcription start site region 77031	954 bp downstream
Tssr77032	transcription start site region 77032	699 bp downstream
Tssr77033	transcription start site region 77033	440 bp downstream
Tssr77034	transcription start site region 77034	377 bp downstream
Tssr77035	transcription start site region 77035	543 bp upstream
Tssr77036	transcription start site region 77036	1696 bp upstream
Tssr77037	transcription start site region 77037	1891 bp upstream