rs50977454 SNP Detail

Summary

• ID
  rs50977454
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:28535453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACCACA TACATAACTG TACTCATAGA GACTTCCTTC TGTATCTGGG CCTTTGCCCT
  CTCTTCTCAC AGCATGCATG TACTCTCACC TTCTCTCTGA CATACTGGCA TCCAACTCTC
  CCCCCCCCCC ACACACACAC ACACTAACCT TTGGTCATAT TTGCAACCCA AAAATGTCTT
  T
  CTTGGTACGC TGAAGCACTG TAATCCTAGG AGAAAGTGGC TCCTCTCTCA ATTTTCAGCA
  AAGGGAGAAG TCTGTTAAAG GTTTCTTTCA ACACACCCAG AGACCAAGAC CCAGCTAGTC
  CTCCAATGCT TTCCACTGCT TACTTCAGCT TACAACCCTC CCAACCTTTC ACTTCAGATA
  ACTCAGTCCT TCCCCTGTAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss131877122	ENSMUSSNP5066967	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50977454					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28535453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc85a	coiled-coil domain containing 85A			mRNA-UTR
				Noncoding-Transcript-Variant
Rr385862	regulatory region 385862			1678 bp downstream
Rr444113	regulatory region 444113			639 bp distal
Rr444114	regulatory region 444114			1069 bp distal
Tssr107205	transcription start site region 107205			1348 bp upstream
Tssr107206	transcription start site region 107206			1224 bp upstream
Tssr107207	transcription start site region 107207			1144 bp upstream