rs50977274 SNP Detail

Summary

• ID
  rs50977274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122213081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCTTTG GCGTTAGTGC
  TTCGTGTATT TAATTAAGGA ATCTTTACAG CCCTTTTTTT TTATTGTTTG TTGTTTGGTT
  TTGCTTTTGG TTTCTGTTTG ATAATTTCTT TAGTGTTACC GTTTTACCTT TTATATGTAG
  ATCTGAAGTC CTCAGGATTT GATTTGGGGT GTGGGGTGGG GTGGGCATCA TGATTCTATG
  R
  CCTGGTATCA TATATTGAAC TGTGTGCTGT ACTCCCACCG TTACCACAGC AATCTTTGGC
  ATAAACCAAG CCACCAGATA GTGCAGAGAT GACTTTATAA CTAGGTTTTG ATAAACAGCA
  TATGTAGGTT CACGAAGCCA TCTAGTTCTG CGTGCACGTG TGAGAGTGAT TGATTTGCCT
  GTTCCCGGCT CGCTCGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135741314	ENSMUSSNP2836760	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50977274					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122213081 () rs orientation: forward

Symbol	Name	Function Class
Bcar3	breast cancer anti-estrogen resistance 3	325 bp upstream
Cpgi13768	CpG island 13768	121 bp proximal
Rr397985	regulatory region 397985	149 bp upstream
Rr584325	regulatory region 584325	229 bp distal
Rr584326	regulatory region 584326	within coordinates
Rr584327	regulatory region 584327	357 bp proximal
Tssr31494	transcription start site region 31494	307 bp upstream
Tssr31495	transcription start site region 31495	340 bp upstream
Tssr31496	transcription start site region 31496	361 bp upstream
Tssr31497	transcription start site region 31497	434 bp upstream
Tssr31498	transcription start site region 31498	553 bp upstream