rs50973718 SNP Detail

Summary

• ID
  rs50973718
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163553598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATACAT TATGAGACTT
  TGACTCGAAA CCAGAAACTA CAAGTGAGAA AATTCAGCAG AGAACTTTGC TTAAGCGTGG
  TGAGTGCATC TGGTGTTTGT GTTGGCGAGC ACAGTAGAAT ATTTTCATGC GCCTTCCCTG
  TTTCCTGCTC TACTTTTTGA AATTCTTTCT TTGAGGCTAA GACTGGGGTG GCTGGGTGGG
  C
  AGGGGACCAA AAAAAAAGGA CAAAGGAAAG AGACTCTTCA AAAACTCTTA TTAGACACTA
  GTGCCCATTG TAGGTCATTT CTATCATTTC CATGTGTTAG CCCAGTTACA GACATTACAG
  ACTAGCTCCT GTTCCACATA CGCCGTGTGA CCTTGGACAA GCTATGGACC TCTCTGAACC
  TCCCCTGTCT GTAGCAAAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148209714	ENSMUSSNP2640937	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50973718					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163553598 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	595 bp distal
Rr569474	regulatory region 569474	699 bp proximal
Rr569475	regulatory region 569475	1774 bp proximal