rs50972447 SNP Detail

Summary

• ID
  rs50972447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13152102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAGGTG AGGCAGGAGC
  CTCACCTGGA GTTCAAAGCC AGCTTGTGGA CTACATTGTA AAAACCCTGT CTCAAATAGA
  TAAGCTAAAG TGGATAGAAG GAGCACATAG GCAAGTACTC TGCCTTAAAG AGATTCTTTT
  TAGGATGTCA TTTATATGGC TTGGTTATAT TCTTATTTCT CAATGGCATC ATAAAATATA
  K
  TCTCAACTAC CTGGAACACT GTCTCTTTTA ATTGATCAAC ATTTCCCAAT TCACAGAATA
  ATGGAGAAAA TTCTGTCTAA CCATATACTA CTCAAGGCAA TGTAAACTTC TGATGAATTC
  AGTACATCAC TACATCTTTA CGTGGATGTA ATATCCCTTA CTAGCACAAT GGGAACTGTG
  AACTGCCAAG GCAAGTGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss133003222	ENSMUSSNP4777890	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss321747180	CHEV_6_13102103	CHEVERUD	SCREENING_POP	f	SNP			G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs50972447					SNP	G	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13152102 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	97 bp proximal
Rr626557	regulatory region 626557	342 bp proximal