rs50966477 SNP Detail

Summary

• ID
  rs50966477
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTA GGCTTGGGGG CTGGATCTCA
  T
  CACATCGCTG TGGCTGTCCT GGAAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147152859	ENSMUSSNP19590	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50966477					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516898 () rs orientation: forward

Symbol	Name	Function Class
Rr562107	regulatory region 562107	946 bp distal
Rr562108	regulatory region 562108	280 bp proximal
Rr562109	regulatory region 562109	792 bp proximal
Tcp11l1	t-complex 11 like 1	Intron