rs50966073 SNP Detail

Summary

• ID
  rs50966073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108448540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTGACACA AACAACCTAA GACAAACCAG GCTTATGCAG
  AGCAGGCTTC GAGGTTGTAG TTGTCACGGA GGGAAGGCCT GGCGGCAGGG ATGTGAAGCA
  R
  CTGATCACAC TGCATCCCCA GTCTGCAAGC AGAGTGGATT CTCGGCTCCT TCTCATTCAA
  GTCTCAGCAC CAGCTGAGGA AATGGTGCCA CTCACATTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133503038	ENSMUSSNP1479584	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50966073					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108448540 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	531 bp proximal
Rr636116	regulatory region 636116	953 bp proximal
Rr636117	regulatory region 636117	1236 bp proximal
Tssr58061	transcription start site region 58061	1454 bp upstream
Tssr58062	transcription start site region 58062	1488 bp upstream
Tssr58063	transcription start site region 58063	1505 bp upstream
Tssr58064	transcription start site region 58064	1536 bp upstream
Tssr62385	transcription start site region 62385	70 bp downstream
Tssr62386	transcription start site region 62386	957 bp downstream