rs50965669 SNP Detail

Summary

• ID
  rs50965669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97965004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCTTTT GTTTTCTCAA
  TACTTCAAAA TACAAAATCC ATCTTCAATG GGAAGGTTTG GGGGCAAACC CCTATCATGG
  AGAAAGGCCC CGGGCTTGGT CAACTTGGTC CTTGGTAGTC TTTCTTTATT CAAGTACTCT
  TTATTTTTGT TTGCAGCCAG CTTCCACTCT TCTCCTTTAT ACCAGGATTT GTCTCCATGT
  Y
  CCCTTGTTTT TTCTTTCTTT CTTTTTTGTC AAGGATACTT TGGTATGGAT CATGTAGAAA
  ACAAGGTTAT CTATAGCAGA CCTAGAGCTC TGGGCTCATG GTTTCTCTTG TAACATCAGG
  AATGTGCCTA GAAAAGATGT TCAGATTCCG GGATGCCTCT CTCTCAGGCT TTCCCCAGGT
  CACTTGAGAA AGCTAACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133422698	ENSMUSSNP1035599	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50965669					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97965004 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635251	regulatory region 635251	1423 bp distal