rs50961972 SNP Detail

Summary

• ID
  rs50961972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135675529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT TTCTCACATA TCTCAGGCTG
  R
  CCTCAAGTTT GCTGTGTAGC AACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147554554	ENSMUSSNP5081347	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321353563	CHEV_4_135504133	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50961972					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135675529 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15085	CpG island 15085			926 bp distal
Gm69275	predicted gene, 69275			1841 bp upstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr602211	regulatory region 602211			1852 bp distal
Rr602212	regulatory region 602212			1760 bp distal
Rr602213	regulatory region 602213			783 bp distal
Rr602214	regulatory region 602214			21 bp proximal
Rr602215	regulatory region 602215			578 bp proximal
Tssr39660	transcription start site region 39660			1723 bp downstream
Tssr39661	transcription start site region 39661			198 bp upstream
Tssr44007	transcription start site region 44007			1836 bp upstream