rs50959581 SNP Detail

Summary

• ID
  rs50959581
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122206586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAAGGGG ACACTTCAAT
  TTCGCTCTTG AGTGCCTACC TCTACACAGA TCAGGGGTGT TGCTGTCAGC CTGACATTGC
  TGTATTAGGC TGCTGGCTGC GGTTCCCCCA GCTACCCATA TCCCTTCTGC CTCAGGACTA
  AGCAGCTTAT CCCATTCCCA TTACACCCCC GTCTTCCCAC GGGGTAACTC AGGGTTTAAA
  M
  TGAGCCCTTC CCCATCAGAT GGTCAAGTGT GGCACAGAGT CTCCCTACAT TTGTTCCTCT
  GATTTTCCAT AGTTATGTGG ATATATACAT CCATATTATA TGCATATCTG AAATTCCATC
  CTCTCCTTCA TTGTCATGAG CATCACTGGT CTCTTGATGT AGCCTCTGAG TCCCACATTA
  CAGGGATCCT CTGCCGGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135741097	ENSMUSSNP2969521	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss320911409	CHEV_3_122115855	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50959581					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122206586 () rs orientation: forward

Symbol	Name	Function Class
Rr584323	regulatory region 584323	1042 bp distal
Rr584324	regulatory region 584324	805 bp proximal