rs50959525 SNP Detail

Summary

• ID
  rs50959525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55682692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTACTTCT ACCCACCTCC
  TCAAATCAAG GAAAAAACTG TTGTGATTAC AGTTGAGTAC TTTGCTTTCA AGCCCTGGCT
  TGTCCACTTC CTGGTTCTAT TACACTGGGA GTTTCTTTGC CTGAAAACCC AGGAACAATG
  AGTATGCTGA GAGAGGGTGA TCCTAGGACA GGATGCTGAT GGTCTTTGCT TTTGTTTTTG
  Y
  CTCATCTCCC TTGTCAATCA ACTAGAAAAA GGTAACACTA ACAAGGGAGA TTATTCCTCT
  GAAAATGGCC AAATGATTAA TCCTATGAAA TATCCTAGAC ATAAGAAGAA AGGTATTTTG
  GTCATGAGCC TAGCCTTTAA TGGCTGAGCC ATCTCTCCAG CCCAAAATAC CCATGGAAGG
  AGTTACAGAG ACAAAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss133214639	ENSMUSSNP5107226	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50959525					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55682692 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	910 bp distal
Rr631016	regulatory region 631016	1313 bp distal