rs50958631 SNP Detail

Summary

• ID
  rs50958631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15258137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAAAGTA AACAAACAAA
  AACTGGAAAA CTGTTTCAAA GTAGTCAGTC ATATCTATTC CTCATTGCCT TGGACATGAA
  GTCTTCTAAT TTGATATCAA GAAAGCAATT AAGCTTCATG TAGTCTTTAT ATTTCTAATT
  AAGAATGTGT TCCTTTTAAG AATAAAACTT TTCATGGAAA TGAGTTAGGA TCATAGCATT
  Y
  ATTAATGTGT CTTAAACATT TATAGGGAAT ATGCACTATG TCCTGTACCA TAATTCAGCA
  TAATTTGGGG TTAGGCTGTT TCTTGTCCTA TTTCTTGATG TAATGAGAGC AACAATTACC
  CAAATAGTGA GAGGTTCTAG CAGATCTCTG AAGCTGCTGA ACATAAAATG GTAGTGACTA
  TATACATTGG GCAACTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60373003	NES15871337	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		C	T	T	C		T
ss320668844	CHEV_3_15193077	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50958631					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60373003	NES15871337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15258137 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	1179 bp proximal
Rr573762	regulatory region 573762	1329 bp proximal
Rr573763	regulatory region 573763	1482 bp proximal