rs50954524 SNP Detail

Summary

• ID
  rs50954524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141233356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCTAGA ACCTCCAGAA
  AGTGGAAGCC AGCCCGGGCT ACTTGAGAAA CTTGTATAAA AACAGAACAA AGGAGACAGG
  GCAGCACCTT TAATCCCAGC ACCTGGAGGG AGAGAAAGGT GCGCCTCTGA GTTCGAAGGT
  CAGCCTGGTC TACATAGTAA ATTCCAAAGC AGCCAGGGCT ACACAGTGAG ACCCTGCTTC
  R
  AAAACAAACA AACATTTCAT CAAAGTTAAA ATCCACACTC CAGAGCCGGG CGTGGTGGCG
  CACGCCTTTA GTCCCAGCAC TTGGGAGGCA GAGGCAGGCG GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC CCTGTCTAGG
  AAAACCAAAA AAAAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147739653	ENSMUSSNP3337493	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321387735	CHEV_4_141061960	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50954524					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141233356 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1248 bp distal
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			1065 bp proximal
Rr603783	regulatory region 603783			1338 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant