rs50952274 SNP Detail

Summary

• ID
  rs50952274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77036438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCATAC AGTGACCACA
  CCAGCATCTG CCCTGTCAGG GCTGAGTGCT CCCGAGCCTC ATGTGATCCC CAGACCTTCT
  CAGGCCAACA GCCGGCACTT CTTGGCCTTC TGCTGTTACC CAGTGATTCA AAAGCATCGA
  AACTGCTTTT TGTAAAAGTC AAGTTTGCCT CTAGGGAAGG GAACAGAAGC CAAGAGACTC
  R
  CTAATGGTAC CAGGTCCTCG AAGATCATGA GAGTTGCTGA TGTTTAAGGC TGAGCCAGGG
  CTCAGAGCCA CGCCTGCCGT TGGGAAGTCT GCTAAAGTGA TTTCCTTTCT CTCTTTCTTT
  CTTTCCTTCC AGTTTGCAGC TTGAGGATGG AAAAACAATG GGAAAGAAAA AAAGCTGCTG
  TTGAGATCGT CCAGTGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373246	NES15266635	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50952274					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373246	NES15266635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77036438 () rs orientation: forward

Symbol	Name	Function Class
Gm67806	predicted gene, 67806	within coordinates
Rr384958	regulatory region 384958	within coordinates
Rr434428	regulatory region 434428	1385 bp proximal
Tssr94215	transcription start site region 94215	1573 bp upstream
Tssr94216	transcription start site region 94216	1593 bp upstream
Tssr98230	transcription start site region 98230	1266 bp upstream
Tssr98231	transcription start site region 98231	593 bp downstream