rs50950398 SNP Detail

Summary

• ID
  rs50950398
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174333638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTATAA TGATGGGCAG
  AGAGAAACGA ACAGCTTTCA ACCCAGCCTG GCCCGTGTGG CCCATGTGGC CCGTGTGGCC
  CGGCGTAAAA AGGTGGTTTA CATCAGCTTT TTGGGTCCAA AGGGAGAGGA GGGGGGCAGT
  GAATGGAATG CTGGGATAGG CAGCGAAGAG CCTGGGGGAG GGGGCACATT GGATCACCCC
  A
  GGCGATGTGA CAAAATCAAC CCAGATCAAA CAGAGAGAAA ACACTAGAAG CCAAAAGGCC
  TGTAAAGACC CAAGTGAATA TTTAGGACAA ATATATATTG AGAAACATGG GAAAGTATGA
  AAAAGCAAGA ATAACCCAGG TGCTCGGGAG GCAGAAGTAG GTGGAATTCT GGGCAGCCTA
  GTCTACAGAG TGAGTTCCAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148344107	ENSMUSSNP37236	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50950398					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174333638 () rs orientation: forward

Symbol	Name	Function Class
Rr572141	regulatory region 572141	1111 bp proximal
Rr572142	regulatory region 572142	1214 bp proximal